Detailed information of SNP:
|
SNP ID:
sf0719446785(Gbrowse)
Chromosome: chr07 Position: 19446785 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 62.43% | 37.57% |
| All Indica | 777 | 92.54% | 7.46% |
| All Japonica | 492 | 20.53% | 79.47% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 358 | 91.90% | 8.10% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 89 | 70.79% | 29.21% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719446785 | C->G | INTERGENIC | None |