Detailed information of SNP:
|
SNP ID:
sf0719448293(Gbrowse)
Chromosome: chr07 Position: 19448293 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719448293 | C->T | INTERGENIC | None |