Detailed information of SNP:
|
SNP ID:
sf0719449764(Gbrowse)
Chromosome: chr07 Position: 19449764 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719449764 | G->A | INTERGENIC | None |