Detailed information of SNP:
|
SNP ID:
sf0719449942(Gbrowse)
Chromosome: chr07 Position: 19449942 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719449942 | A->G | INTERGENIC | None |