Detailed information of SNP:
SNP ID:
sf0719453323(Gbrowse)
Chromosome: chr07 Position: 19453323 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1399 | 96.78% | 3.22% |
All Indica | 797 | 99.37% | 0.63% |
All Japonica | 495 | 99.80% | 0.20% |
Aus | 52 | 46.15% | 53.85% |
Indica I | 374 | 98.93% | 1.07% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 210 | 99.52% | 0.48% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 66 | 98.48% | 1.52% |
Group VI/Aromatic | 13 | 15.38% | 84.62% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0719453323 | T->C | INTERGENIC | None |