Detailed information of SNP:
|
SNP ID:
sf0719458570(Gbrowse)
Chromosome: chr07 Position: 19458570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.56% | 49.44% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719458570 | C->T | INTERGENIC | None |