Detailed information of SNP:
|
SNP ID:
sf0719462621(Gbrowse)
Chromosome: chr07 Position: 19462621 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 798 | 84.71% | 15.29% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719462621 | C->T | LOC_Os07g32630(LOC_Os07g32630.1) | Non-Synonymous SNP |