Detailed information of SNP:
|
SNP ID:
sf0719464981(Gbrowse)
Chromosome: chr07 Position: 19464981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.85% | 49.15% |
| All Indica | 798 | 19.05% | 80.95% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719464981 | G->A | INTERGENIC | None |