Detailed information of SNP:
|
SNP ID:
sf0719465356(Gbrowse)
Chromosome: chr07 Position: 19465356 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.88% | 43.12% |
| All Indica | 798 | 84.59% | 15.41% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719465356 | C->T | INTERGENIC | None |