Detailed information of SNP:
|
SNP ID:
sf0719465620(Gbrowse)
Chromosome: chr07 Position: 19465620 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.12% | 44.88% |
| All Indica | 796 | 81.78% | 18.22% |
| All Japonica | 496 | 16.33% | 83.67% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719465620 | G->A | INTERGENIC | None |