Detailed information of SNP:
|
SNP ID:
sf0719467198(Gbrowse)
Chromosome: chr07 Position: 19467198 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 56.81% | 43.19% |
| All Indica | 794 | 26.83% | 73.17% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719467198 | A->G | LOC_Os07g32640(LOC_Os07g32640.1) | INTRON |