Detailed information of SNP:
|
SNP ID:
sf0719482137(Gbrowse)
Chromosome: chr07 Position: 19482137 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 58.60% | 41.40% |
| All Indica | 794 | 84.76% | 15.24% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719482137 | A->T | INTERGENIC | None |