Detailed information of SNP:
|
SNP ID:
sf0719483082(Gbrowse)
Chromosome: chr07 Position: 19483082 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.38% | 40.62% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719483082 | G->T | INTERGENIC | None |