Detailed information of SNP:
|
SNP ID:
sf0719483650(Gbrowse)
Chromosome: chr07 Position: 19483650 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.49% | 39.51% |
| All Indica | 797 | 88.08% | 11.92% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719483650 | G->A | INTERGENIC | None |