Detailed information of SNP:
|
SNP ID:
sf0719490058(Gbrowse)
Chromosome: chr07 Position: 19490058 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 60.40% | 39.60% |
| All Indica | 796 | 87.81% | 12.19% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719490058 | G->A | INTERGENIC | None |