Detailed information of SNP:
|
SNP ID:
sf0719490375(Gbrowse)
Chromosome: chr07 Position: 19490375 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.77% | 40.23% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 496 | 21.57% | 78.43% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719490375 | G->A | INTERGENIC | None |