Detailed information of SNP:
|
SNP ID:
sf0719491487(Gbrowse)
Chromosome: chr07 Position: 19491487 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 93.02% | 6.98% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719491487 | A->G | LOC_Os07g32660(LOC_Os07g32660.1) | INTRON |