Detailed information of SNP:
|
SNP ID:
sf0719491809(Gbrowse)
Chromosome: chr07 Position: 19491809 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 52.08% | 47.92% |
| All Indica | 797 | 20.58% | 79.42% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 25.24% | 74.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719491809 | A->T | LOC_Os07g32660(LOC_Os07g32660.1) | INTRON |