Detailed information of SNP:
|
SNP ID:
sf0719498898(Gbrowse)
Chromosome: chr07 Position: 19498898 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.32% | 38.68% |
| All Indica | 796 | 86.06% | 13.94% |
| All Japonica | 497 | 24.55% | 75.45% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719498898 | T->C | INTERGENIC | None |