Detailed information of SNP:
|
SNP ID:
sf0719504910(Gbrowse)
Chromosome: chr07 Position: 19504910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 52.27% | 47.73% |
| All Indica | 795 | 20.63% | 79.37% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 11.47% | 88.53% |
| Indica II | 210 | 32.38% | 67.62% |
| Indica Intermediate | 210 | 25.24% | 74.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719504910 | C->T | INTERGENIC | None |