Detailed information of SNP:
|
SNP ID:
sf0719505873(Gbrowse)
Chromosome: chr07 Position: 19505873 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.85% | 49.15% |
| All Indica | 796 | 24.87% | 75.13% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719505873 | C->A | INTERGENIC | None |