Detailed information of SNP:
|
SNP ID:
sf0719506184(Gbrowse)
Chromosome: chr07 Position: 19506184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 797 | 24.84% | 75.16% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719506184 | G->A | INTERGENIC | None |