Detailed information of SNP:
|
SNP ID:
sf0719507941(Gbrowse)
Chromosome: chr07 Position: 19507941 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.14% | 6.86% |
| All Indica | 794 | 89.92% | 10.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719507941 | C->A | INTERGENIC | None |