Detailed information of SNP:
|
SNP ID:
sf0719511722(Gbrowse)
Chromosome: chr07 Position: 19511722 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.95% | 7.05% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719511722 | C->T | INTERGENIC | None |