Detailed information of SNP:
|
SNP ID:
sf0719512822(Gbrowse)
Chromosome: chr07 Position: 19512822 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.95% | 46.05% |
| All Indica | 797 | 71.77% | 28.23% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 82.09% | 17.91% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719512822 | G->A | INTERGENIC | None |