Detailed information of SNP:
|
SNP ID:
sf0719519020(Gbrowse)
Chromosome: chr07 Position: 19519020 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.09% | 16.91% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719519020 | G->A | LOC_Os07g32690(LOC_Os07g32690.1) | INTRON |