Detailed information of SNP:
|
SNP ID:
sf0719526877(Gbrowse)
Chromosome: chr07 Position: 19526877 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.91% | 15.09% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719526877 | C->A | INTERGENIC | None |