Detailed information of SNP:
|
SNP ID:
sf0719526917(Gbrowse)
Chromosome: chr07 Position: 19526917 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.76% | 45.24% |
| All Indica | 799 | 30.41% | 69.59% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 21.33% | 78.67% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719526917 | T->C | INTERGENIC | None |