Detailed information of SNP:
|
SNP ID:
sf0719532365(Gbrowse)
Chromosome: chr07 Position: 19532365 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.53% | 41.47% |
| All Indica | 798 | 86.34% | 13.66% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719532365 | C->T | LOC_Os07g32710(LOC_Os07g32710.1) | Synonymous |