Detailed information of SNP:
|
SNP ID:
sf0719533517(Gbrowse)
Chromosome: chr07 Position: 19533517 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 58.65% | 41.35% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 444 | 15.32% | 84.68% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 328 | 1.83% | 98.17% |
| Tropical Japonica | 64 | 78.12% | 21.88% |
| Japonica Intermediate | 52 | 23.08% | 76.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719533517 | T->A | LOC_Os07g32710(LOC_Os07g32710.1) | UTR_3_PRIME |