Detailed information of SNP:
|
SNP ID:
sf0719545843(Gbrowse)
Chromosome: chr07 Position: 19545843 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.99% | 42.01% |
| All Indica | 798 | 82.33% | 17.67% |
| All Japonica | 494 | 10.73% | 89.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719545843 | A->C | INTERGENIC | None |