Detailed information of SNP:
|
SNP ID:
sf0719558032(Gbrowse)
Chromosome: chr07 Position: 19558032 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 72.60% | 27.40% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 448 | 18.30% | 81.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 331 | 4.83% | 95.17% |
| Tropical Japonica | 59 | 79.66% | 20.34% |
| Japonica Intermediate | 58 | 32.76% | 67.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719558032 | C->T | INTERGENIC | None |