Detailed information of SNP:
|
SNP ID:
sf0719600165(Gbrowse)
Chromosome: chr07 Position: 19600165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.74% | 49.26% |
| All Indica | 798 | 24.19% | 75.81% |
| All Japonica | 497 | 86.92% | 13.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 21.12% | 78.88% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719600165 | G->A | LOC_Os07g32774(LOC_Os07g32774.1) | INTRON |
| sf0719600165 | G->A | LOC_Os07g32774(LOC_Os07g32774.2) | INTRON |