Detailed information of SNP:
|
SNP ID:
sf0719600189(Gbrowse)
Chromosome: chr07 Position: 19600189 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.30% | 32.70% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719600189 | A->G | LOC_Os07g32774(LOC_Os07g32774.1) | INTRON |
| sf0719600189 | A->G | LOC_Os07g32774(LOC_Os07g32774.2) | INTRON |