Detailed information of SNP:
|
SNP ID:
sf0719610749(Gbrowse)
Chromosome: chr07 Position: 19610749 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 79.18% | 20.82% |
| All Indica | 788 | 91.50% | 8.50% |
| All Japonica | 496 | 55.85% | 44.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 335 | 57.01% | 42.99% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719610749 | C->T | INTERGENIC | None |