Detailed information of SNP:
|
SNP ID:
sf0719617210(Gbrowse)
Chromosome: chr07 Position: 19617210 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 78.63% | 21.37% |
| All Indica | 799 | 80.23% | 19.77% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719617210 | A->G | INTERGENIC | None |