Detailed information of SNP:
|
SNP ID:
sf0719625516(Gbrowse)
Chromosome: chr07 Position: 19625516 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719625516 | C->T | LOC_Os07g32800(LOC_Os07g32800.1) | INTRON |
| sf0719625516 | C->T | LOC_Os07g32800(LOC_Os07g32800.2) | INTRON |