Detailed information of SNP:
|
SNP ID:
sf0719631138(Gbrowse)
Chromosome: chr07 Position: 19631138 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.48% | 35.52% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719631138 | T->C | INTERGENIC | None |