Detailed information of SNP:
|
SNP ID:
sf0719632033(Gbrowse)
Chromosome: chr07 Position: 19632033 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 62.75% | 37.25% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 495 | 15.15% | 84.85% |
| Aus | 32 | 87.50% | 12.50% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719632033 | C->T | INTERGENIC | None |