Detailed information of SNP:
|
SNP ID:
sf0719639469(Gbrowse)
Chromosome: chr07 Position: 19639469 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.33% | 37.67% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719639469 | C->T | INTERGENIC | None |