Detailed information of SNP:
|
SNP ID:
sf0719690540(Gbrowse)
Chromosome: chr07 Position: 19690540 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 54.31% | 45.69% |
| All Indica | 795 | 22.39% | 77.61% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 13.98% | 86.02% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719690540 | G->A | INTERGENIC | None |