Detailed information of SNP:
|
SNP ID:
sf0719710148(Gbrowse)
Chromosome: chr07 Position: 19710148 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 81.26% | 18.74% |
| All Indica | 794 | 93.95% | 6.05% |
| All Japonica | 497 | 57.55% | 42.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719710148 | T->C | INTERGENIC | None |