Detailed information of SNP:
|
SNP ID:
sf0719724030(Gbrowse)
Chromosome: chr07 Position: 19724030 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 71.12% | 28.88% |
| All Indica | 770 | 89.87% | 10.13% |
| All Japonica | 496 | 40.12% | 59.88% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 359 | 89.97% | 10.03% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 204 | 86.27% | 13.73% |
| Temperate Japonica | 334 | 42.22% | 57.78% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719724030 | A->C | INTERGENIC | None |