Detailed information of SNP:
|
SNP ID:
sf0719726016(Gbrowse)
Chromosome: chr07 Position: 19726016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1258 | 80.84% | 19.16% |
| All Indica | 662 | 82.33% | 17.67% |
| All Japonica | 494 | 80.57% | 19.43% |
| Aus | 53 | 75.47% | 24.53% |
| Indica I | 310 | 84.19% | 15.81% |
| Indica II | 179 | 79.89% | 20.11% |
| Indica Intermediate | 173 | 81.50% | 18.50% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719726016 | C->T | INTERGENIC | None |