Detailed information of SNP:



SNP ID: sf0719726016(Gbrowse)

Chromosome: chr07

Position: 19726016
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1258 80.84% 19.16%
All Indica662 82.33% 17.67%
All Japonica494 80.57% 19.43%
Aus53 75.47% 24.53%
Indica I310 84.19% 15.81%
Indica II179 79.89% 20.11%
Indica Intermediate173 81.50% 18.50%
Temperate Japonica333 98.50% 1.50%
Tropical Japonica93 19.35% 80.65%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic10 100.00% 0.00%
Intermediate39 61.54% 38.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0719726016 C->T INTERGENIC None