Detailed information of SNP:
|
SNP ID:
sf0719726306(Gbrowse)
Chromosome: chr07 Position: 19726306 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 83.18% | 16.82% |
| All Indica | 795 | 97.23% | 2.77% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719726306 | A->G | INTERGENIC | None |