Detailed information of SNP:
|
SNP ID:
sf0719726346(Gbrowse)
Chromosome: chr07 Position: 19726346 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 74.52% | 25.48% |
| All Indica | 785 | 95.67% | 4.33% |
| All Japonica | 495 | 37.98% | 62.02% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 366 | 96.99% | 3.01% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719726346 | C->T | LOC_Os07g33020(LOC_Os07g33020.1) | SNPs that introduce stop codons |