Detailed information of SNP:
|
SNP ID:
sf0719726574(Gbrowse)
Chromosome: chr07 Position: 19726574 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 58.30% | 41.70% |
| All Indica | 793 | 88.27% | 11.73% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719726574 | G->A | LOC_Os07g33020(LOC_Os07g33020.1) | INTRON |