Detailed information of SNP:
|
SNP ID:
sf0719726923(Gbrowse)
Chromosome: chr07 Position: 19726923 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 59.22% | 40.78% |
| All Indica | 791 | 91.40% | 8.60% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719726923 | C->T | LOC_Os07g33020(LOC_Os07g33020.1) | INTRON |