Detailed information of SNP:
|
SNP ID:
sf0719727081(Gbrowse)
Chromosome: chr07 Position: 19727081 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.08% | 1.92% |
| All Indica | 787 | 97.59% | 2.41% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719727081 | G->A | LOC_Os07g33020(LOC_Os07g33020.1) | Synonymous |