Detailed information of SNP:
|
SNP ID:
sf0719727162(Gbrowse)
Chromosome: chr07 Position: 19727162 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1294 | 59.97% | 40.03% |
| All Indica | 687 | 33.92% | 66.08% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 59 | 20.34% | 79.66% |
| Indica I | 320 | 36.25% | 63.75% |
| Indica II | 190 | 33.16% | 66.84% |
| Indica Intermediate | 177 | 30.51% | 69.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719727162 | C->T | INTERGENIC | None |